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Filename :
infer-icd10-cm.rst
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**Example 1: To detect medical condition entities and link to the ICD-10-CM Ontology directly from text** The following ``infer-icd10-cm`` example labels the detected medical condition entities and links those entities with codes in the 2019 edition of the International Classification of Diseases Clinical Modification (ICD-10-CM). :: aws comprehendmedical infer-icd10-cm \ --text "The patient complains of abdominal pain, has a long-standing history of diabetes treated with Micronase daily." Output:: { "Entities": [ { "Id": 0, "Text": "abdominal pain", "Category": "MEDICAL_CONDITION", "Type": "DX_NAME", "Score": 0.9475538730621338, "BeginOffset": 28, "EndOffset": 42, "Attributes": [], "Traits": [ { "Name": "SYMPTOM", "Score": 0.6724207401275635 } ], "ICD10CMConcepts": [ { "Description": "Unspecified abdominal pain", "Code": "R10.9", "Score": 0.6904221177101135 }, { "Description": "Epigastric pain", "Code": "R10.13", "Score": 0.1364113688468933 }, { "Description": "Generalized abdominal pain", "Code": "R10.84", "Score": 0.12508003413677216 }, { "Description": "Left lower quadrant pain", "Code": "R10.32", "Score": 0.10063883662223816 }, { "Description": "Lower abdominal pain, unspecified", "Code": "R10.30", "Score": 0.09933677315711975 } ] }, { "Id": 1, "Text": "diabetes", "Category": "MEDICAL_CONDITION", "Type": "DX_NAME", "Score": 0.9899052977561951, "BeginOffset": 75, "EndOffset": 83, "Attributes": [], "Traits": [ { "Name": "DIAGNOSIS", "Score": 0.9258432388305664 } ], "ICD10CMConcepts": [ { "Description": "Type 2 diabetes mellitus without complications", "Code": "E11.9", "Score": 0.7158446311950684 }, { "Description": "Family history of diabetes mellitus", "Code": "Z83.3", "Score": 0.5704703330993652 }, { "Description": "Family history of other endocrine, nutritional and metabolic diseases", "Code": "Z83.49", "Score": 0.19856023788452148 }, { "Description": "Type 1 diabetes mellitus with ketoacidosis without coma", "Code": "E10.10", "Score": 0.13285516202449799 }, { "Description": "Type 2 diabetes mellitus with hyperglycemia", "Code": "E11.65", "Score": 0.0993388369679451 } ] } ], "ModelVersion": "0.1.0" } For more information, see `Infer ICD10-CM <https://docs.aws.amazon.com/comprehend/latest/dg/ontology-linking-icd10.html>`__ in the *Amazon Comprehend Medical Developer Guide*. **Example 2: To detect medical condition entities and link to the ICD-10-CM Ontology from a file pathway** The following ``infer-icd-10-cm`` example labels the detected medical condition entities and links those entities with codes in the 2019 edition of the International Classification of Diseases Clinical Modification (ICD-10-CM). :: aws comprehendmedical infer-icd10-cm \ --text file://icd10cm.txt Contents of ``icd10cm.txt``:: { "The patient complains of abdominal pain, has a long-standing history of diabetes treated with Micronase daily." } Output:: { "Entities": [ { "Id": 0, "Text": "abdominal pain", "Category": "MEDICAL_CONDITION", "Type": "DX_NAME", "Score": 0.9475538730621338, "BeginOffset": 28, "EndOffset": 42, "Attributes": [], "Traits": [ { "Name": "SYMPTOM", "Score": 0.6724207401275635 } ], "ICD10CMConcepts": [ { "Description": "Unspecified abdominal pain", "Code": "R10.9", "Score": 0.6904221177101135 }, { "Description": "Epigastric pain", "Code": "R10.13", "Score": 0.1364113688468933 }, { "Description": "Generalized abdominal pain", "Code": "R10.84", "Score": 0.12508003413677216 }, { "Description": "Left lower quadrant pain", "Code": "R10.32", "Score": 0.10063883662223816 }, { "Description": "Lower abdominal pain, unspecified", "Code": "R10.30", "Score": 0.09933677315711975 } ] }, { "Id": 1, "Text": "diabetes", "Category": "MEDICAL_CONDITION", "Type": "DX_NAME", "Score": 0.9899052977561951, "BeginOffset": 75, "EndOffset": 83, "Attributes": [], "Traits": [ { "Name": "DIAGNOSIS", "Score": 0.9258432388305664 } ], "ICD10CMConcepts": [ { "Description": "Type 2 diabetes mellitus without complications", "Code": "E11.9", "Score": 0.7158446311950684 }, { "Description": "Family history of diabetes mellitus", "Code": "Z83.3", "Score": 0.5704703330993652 }, { "Description": "Family history of other endocrine, nutritional and metabolic diseases", "Code": "Z83.49", "Score": 0.19856023788452148 }, { "Description": "Type 1 diabetes mellitus with ketoacidosis without coma", "Code": "E10.10", "Score": 0.13285516202449799 }, { "Description": "Type 2 diabetes mellitus with hyperglycemia", "Code": "E11.65", "Score": 0.0993388369679451 } ] } ], "ModelVersion": "0.1.0" } For more information, see `Infer-ICD10-CM <https://docs.aws.amazon.com/comprehend/latest/dg/ontology-linking-icd10.html>`__ in the *Amazon Comprehend Medical Developer Guide*.